DNA microarrays /edited by Ulrike A Nuber. --Taylor & Francis, 2005. --(58.21/D518n)

Contents

Contents:

1. Introduction: DNA Microarrays-Ten Years Old, but no Old Hat  1

2. cDNA Microarray Analysis and its Role in Toxicology- a Case Study  7

3. Gene Expression Profiling in Plants Using cDNA Microarrays  25

4. Identification of Gene Expression Patterns for a Molecular Diagnosis

    of Kidney Tumors  39

5. Gene Expression Analysis of Differentiating Neural Progenitor Cells-a

     Time Course Study  51

6. A Microarray-Based Screening Method for Known and Novel SNPs  65

7. From Gene Chips to Disease Chips-New Approach in Molecular

    Diagnosis of Eye Diseases  83

8. Multiplexed SNP Genotyping Using Allele-Specific Primer Extension

    on Microarrays  97

9. Profiling the Arabidopsis Transcriptome  111

10. Affymetrix Genechip Analyses-the Impact of RNA Quality  125

11. Molecular Karyotyping by Means of Array CGH: Linking Gene

      Dosage Alterations to Disease Phenotypes  139

12. DNA Microarrays: Analysis of Chromosomes and Their Aberrations  157

13. Mapping Transcription Factor Binding Sites Using ChIP-Chip-General

      Considerations  171

14. ChIP-on Chip: Searching For Novel Transcription Factor Targets  179

15. Turning Photons into Results: Principles of Fluorescent Microarray

      Scanning  191

16. Microarray Detection with Laser Scanning Device  203

17. Normalization Strategies for Microarray Data Analysis  215

18.Microarray Data Analysis: Differential Gene Expression  227

19. Clustering and Classification Methods for Gene Expression Data

       Analysis  241

20. Statistical Analysis of Microarray Time Course Data  257

21. Array CGH Data Analysis  281

22. MIAME  291