Principles of computational cell biology : from protein complexes to cellular networks / Volkhard Helms. -- 2nd ed. -- Weinheim : Wiley-VCH, c2019. – (58.157/H481/2nd ed.)

Contents

Preface of the First Edition  xv

Preface of the Second Edition  xvii

1       Networks in Biological Cells  1

2       Structures of Protein Complexes and Subcellular Structures  21

3       Analysis of Protein-Protein Binding  63

4       Algorithms on Mathematical Graphs  89

5       Protein-Protein Interaction Networks - Pairwise Connectivity  111

6       Protein-Protein Interaction Networks - Structural Hierarchies  141

7       Protein-DNA Interactions  181

8       Gene Expression and Protein Synthesis  197

9       Gene Regulatory Networks  227

10      Regulatory Noncoding RNA  257

11      Computational Epigenetics  273

12      Metabolic Networks  303

13      Kinetic Modeling of Cellular Processes  349

14      Stochastic Processes in Biological Cells  375

15      Integrated Cellular Networks  409

16      Outlook  427

Index  429