Bioinformatics database systems / Kevin Byron, Katherine G. Herbert, Jason T. L. Wang. -- Boca Raton : CRC Press, Taylor & Francis, c2017. – (58.17115 /B996)

Contents

LIST OF FIGURES

LIST OF TABLES

PREFACE

ACKNOWLEDGMENTS

CHAPTER 1 Overview of Bioinformatics Databases

1.1     INTRODUCTION

1.2     SEQUENCE DATABASES

1.3     PHYLOGENETIC  DATABASES

1.4     STRUCTURE AND  PATHWAY  DATABASES

1.5     MICROARRAY AND  BOUTIQUE  DATABASES

CHAPTER 2 Biological Data Cleaning

2.1     INTRODUCTION

2.2     GENERAL DATA CLEANING

2.3     CASE STUDY IN BIOLOGICAL DATA CLEANING

CHAPTER 3 Biological Data Integration

3.1     INTRODUCTION

3.2     GENERAL DATA INTEGRATION

3.3     TOPICS  IN  BIOLOGICAL DATA INTEGRATION

CHAPTER 4 Biological Data Searching

4.1     INTRODUCTION

4.2     BIOLOGICAL  DATA SEARCHING  USING  BLAST

4.3     BIOLOGICAL DATA SEARCHING USING THE UCSC GENOME BROWSER

4.4     CASE STUDY IN PHYLOGENETIC TREE DATABASE SEARCH

4.5     CASE STUDY IN  RNA  PSEUDOKNOT DATABASE SEARCH

CHAPTER 5 Biological Data Mining

5.1     INTRODUCTION

5.2     GENERAL DATA MINING

5.3     BIOLOGICAL DATA MINING

5.4     CASE STUDY IN  BIOLOGICAL MOTIF DISCOVERY

5.5     CASE STUDY IN  BIOLOGICAL DATA MINING

CHAPTER 6 Biological Network Inference

6.1     INTRODUCTION

6.2     GENE REGULATORY NETWORK INFERENCE

CHAPTER 7 Cloud-Based Biological Data Processing   193

7.1     INTRODUCTION

7.2     DATA  PROCESSING  IN THE CLOUD

Bibliography

Index