DNA barcodes : methods and protocols / edited by W. John Kress and David L. Erickson. — New York : Humana press, 2012. – (58.17/M592/v.858)

Contents

    Contents
    
    Foreword v
    Preface ix
    Contributors xiii
    PART I INTRODUCTION
    1 DNA Barcodes: Methods and Protocols
    PART II DNA BARCODES FOR THE TREE OF LIFE
    2 Introduction to Animal DNA Barcoding Protocols
    3 DNA Barcodes for Insects
    4 DNA Barcoding Methods for Invertebrates
    5 DNA Barcoding Amphibians and Reptiles
    6 DNA Barcoding Fishes 109
    7 DNA Barcoding Birds: From Field Collection to Data Analysis 127
    8 DNA Barcoding in Mammals
    9 Methods for DNA Barcoding of Fungi
    10 Methods for DNA Barcoding Photosynthetic Protists Emphasizing the Macroalgae and Diatoms 207
    11 DNA Barcoding Methods for Land Plants
    PART III GENERATING DNA BARCODE DATA
    12 Field Information Management Systems for DNA Barcoding 255
    13 Laboratory Information Management Systems for DNA Barcoding
    14 DNA Extraction， Preservation， and Amplification
    15 DNA Mini-barcodes
    16 Ways to Mix Multiple PCR Amplicons into Single 454 Run for DNA Barcoding
    PART IV APPLICATIONS OF DNA BARCODE DATA
    17 The Practical Evaluation of DNA Barcode Efficacy
    18 Plant DNA Barcodes， Taxonomic Management， and Species Discovery in Tropical Forests 379
    19 Construction and Analysis of Phylogenetic Trees Using DNA Barcode Data 395
    20 Phylogenetic Analyses of Ecological Communities Using DNA Barcode Data 409
    PART V CASE STUDIES USING DNA BARCODES
    21 FISH-BOL， A Case Study for DNA Barcodes
    22 Generating Plant DNA Barcodes for Trees in Long-Term Forest Dynamics Plots
    23 Future Directions
    Index