Mass spectrometry data analysis in proteomics / edited by Rune Matthiesen. — Totowa, New Jersey : Humana Press, c2007. – (58.17/M592/v.367)

Contents

    Contents
    
    1. Introduction to Proteomics
    2. Extracting Monoisotopic Single-Charge Peaks From Liquid Chromatography-Electrospray Ionization-Mass Spectrometry
    3. Calibration of Matrix-Assisted Laser Desorption/Ionization Time-of-Flight Peptide Mass Fingerprinting Spectra
    4. Protein Identification by Peptide Mass Fingerprinting
    5. Generating Unigene Collections of Expressed Sequence Tag Sequences for Use in Mass Spectrometry Identification
    6. Protein Identification by Tandem Mass Spectrometry and Sequence Database Searching
    7. Virtual Expert Mass Spectrometrist v3.0: An Integrated Tool for Proteome Analysis
    8. Quantitation With Virtual Expert Mass Spectrometrist
    9. Sequence Handling by Sequence Analysis Toolbox vl.0
    10. Interpretation of Collision-Induced Fragmentation Tandem Mass Spectra of Posttranslationally Modified Peptides
    11. Retention Time Prediction and Protein Identification
    12. Quantitative Proteomics by Stable Isotope Labeling and Mass Spectrometry
    13. Quantitative Proteomics for Two-Dimensional Gels Using Difference Gel Electrophoresis
    14. Proteomic Data Exchange and Storage: Using Proteios
    15. Proteomic Data Exchange and Storage: The Need for Common Standards and Public Repositories
    16. Organization of Proteomics Data With YassDB
    17. Analysis of Carbohydrates by Mass Spectrometry
    18. Useful Mass Spectrometry Programs Freely Available on the Internet
    Appendix
    Index