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Plant genotyping : methods and protocols / edited by Yuri Shavrukov. -- New York, NY : Humana Press, 2023. – (58.17/M592/v.2638) |
Contents
Preface
Contributors.
1 Genotyping by Sequencing (GBS) for Genome-Wide SNP Identification in Plants.
2 Genotyping by Multiplexed Sequencing (GMS) Using SNP Markers
3 Computational Protocol for DNA Methylation Profiling in Plants Using Restriction Enzyme-Based Genome Reduction
4 Double Digest Restriction-Site Associated DNA Sequencing (ddRADseq) Technology
5 Whole Genome Wide SSR Markers Identification Based on ddRADseq Data
6 High-Throughput Association Mapping in Brassica napus L.: Methods and Applications
7 Polyploid SNP Genotyping Using the MassARRAY System
8 q PCR Genotyping of Polyploid Species
9 Genome-Wide Association Studies (GWAS)
10 Transcriptomic Approach for Global Distribution of SNP/Indel and Plant Genotyping
12 Modifications of Kompetitive Allele-Specific PCR (KASP) Genotyping for Detection of Rare Alleles
13 Amplifluor-Based SNP Genotyping
14 SNP Genotyping with Amplifluor-Like Method
15 Semi-Thermal Asymmetric Reverse PCR (STARP) Genotyping
16 Modified Allele-Specific qPCR (ASQ) Genotyping
17 Allele-Specific Mutation Genotyping with Mismatches in Primer Design
18 PCR Allele Competitive Extension (PACE)
19 Molecular Beacon Probe (MBP)-Based Real-Time PCR
20 Molecular Beacons - Loop-Mediated Amplification (MB-LAMP)
21 TaqMan Probes for Plant Species Identification and Quantification in Food and Feed Traceability
22 Tetra-Primer Amplification Refractory Mutation System (T-ARMS)
23 Penta-Primer Amplification Refractory Mutation System (PARMS) with Direct PCR-Based SNP Marker-Assisted Selection (D-MAS)
24 High-Resolution Melting (HRM) Genotyping
25 Modified High-Resolution Melting (HRM) Marker Systems Increasing Discriminability Between Homozygous Alleles
26 A New SNP Genotyping Technology by Target SNP-Seq
27 Derived Polymorphic Amplified Cleaved Sequence (dPACS) Assay
28 Tubulin-Based Polymorphism (TBP) in Plant Genotyping
29 Multiplexed ISSR Genotyping by Sequencing (MIG-Seq)
30 Application of SolCAP Genotyping in Potato (So1anum tuberosum L.) Association Mapping
31 Fluorescence In Situ Hybridization (FISH) for the Genotyping of Triticeae Tribe Species and Hybrids
32 Innovative Advances in Plant Genotyping
Index
