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RNA bioinformatics / edited by Ernesto Picardi. -- Second edition. -- New York, NY : Humana Press, [2021]. – (58.17/M592/v.2284) |
Contents
Contributors
1 Advanced Design of Structural RNAs Using RNARedPrint
2 Modeling and Predicting RNA Three-Dimensional Structures
3 Motif Discovery from CLIP Experiments
4 Profiling of RNA Structure at Single-Nucleotide Resolution Using nextPARS
5 RNA Framework for Assaying the Structure of RNAs by High-Throughput Sequencing
6 Using RNentropy to Detect Significant Variation in Gene Expression Across Multiple RNA-Seq or Single-Cell RNA-Seq Samples
7 Statistical Modeling of High Dimensional Counts
8 QuickIsoSeq for Isoform Quantification in Large-Scale RNA Sequencing
9 Summarizing RNA-Seq Data or Differentially Expressed Genes Using Gene Set, Network, or Pathway Analysis
10 Computational Analysis of circRNA Expression Data
11 Differential Expression Analysis of Long Noncoding RNAs
12 Micro-RNA Quantification, Target Gene Identification, and Pathway Analysis
13 In Silico Analysis of Micro-RNA Sequencing Data
14 RNA Editing Detection in HPC Infrastructures
15 Identification of Genes Post-Transcriptionally Regulated from RNA-seq: The Case Study of Liver Hepatocellular Carcinoma
16 Computational Analysis of Single-Cell RNA-Seq Data
17 Normalization of Single-Cell RNA-Seq Data
18 DimensionaLity Reduction of Single-Cell RNA-Seq Data
19 Single-Cell RNA Sequencing Analysis: A Step-by-Step Overview
20 RNA-Seq Data Analysis in Galaxy
21 RAP: A Web Tool for RNA-Seq Data Analysis
22 iDEP Web Application for RNA-Seq Data Analysis
23 Exploring Noninvasive Biomarkers with the miRandola Database: A Tool for Translational Medicine
24 Database Resources for Functional Circular RNAs
25 Databases for RNA Editing Collections
26 MODOMICS: An Operational Guide to the Use of the RNA Modification Pathways Database
27 MeT-DB V2.0: Elucidating Context-Specific Functions of N6-Methyl-Adenosine Methyltranscriptome
28 WHISTLE: A Functionally Annotated High-Accuracy Map of Human m6A Epitranscriptome
29 Transcript Identification Through Long-Read Sequencing
30 Transcript Isoform-Specific Estimation of Poly(A) Tail Length by Nanopore Sequencing of Native RNA
31 Nanopore RNA Sequencing Analysis
Correction to: RNA Bioinformatics
Index
