Computational methods in synthetic biology / edited by Mario Andrea Marchisio. -- 2nd ed. -- New York : Humana Press, 2021. – (58.17 /M592 /v.2189)

Contents

1  Using a Design of Experiments' Approach to Inform the Design of Hybrid Synthetic Yeast Promoters

2  Computational Design of Multiplex Oligonucleotide-Based Assays

3  Computational Methods for ~e Design of Recombinase Logic Circuits

4  Modular Modeling of Genetic Circuits in SBML Level 3

5  CRISPR-ERA: A Webserver for Guide RNA Design of Gene Editing and Regulation

6  iGUIDE Method for CRISPR Off-Target Detection

7  Web-Based Base Editing Toolkits: BE-Designer and BE-Analyzer

8  Synthetic Gene Circuit Analysis and Optimization

9  Monitoring Single S. cerevisiae Cells with Multifrequency Electrical Impedance Spectroscopy in an Electrode-Integrated Microfluidic Device

10  Construction of Protein Expression Network

11  Systems-Theoretic Approaches to Design Biological Networks with Desired Functionalities

12  A Deterministic Compartmental Modeling Framework for Disease Transmission

13  Computer Aided Assembly and Verification of Synthetic Chromosomes

14  Minimal Genome Design Algorithms Using Whole-Cell Models

15  Tn-Core: Functionally Interpreting Transposon-Sequencing Data with Metabolic Network Analysis

16  Genome-Scale Metabolic Modeling of Escherichia coli and Its Chassis Design for Synthetic Biology Applications

17  A Systems Bioinformatics Approach to Interconnect Biological Pathways

Index