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Coronaviruses : methods and protocols / edited by Helena J. Maier, Erica Bickerton. -- 2nd ed. -- New York, NY : Humana Press, 2020. – (58.17 /M592 /v.2203)

Contents

Preface

Contributors

1  Coronaviruses: An Updated Overview of Their Replication and Pathogenesis

PART I  CORONAVIRUS DETECTION, DISCOVERY, AND EVOLUTION

2  Discovery of Novel Coronaviruses in Rodents

3  Detection and Discovery of Coronaviruses in Wild Bird Populations

4  Competitive ELISA for the Detection of Serum Antibodies Specific for Middle East Respiratory Syndrome Coronavirus (MERS-CoV)

5  Whole-Genome Sequencing Protocols for IBV and Other Coronaviruses Using High-Throughput Sequencing

PART II  PROPAGATION AND TITRATION OF CORONAVIRUSES

6  Isolation and Tissue Culture Adaptation of Porcine Deltacoronavirus: A Case Study

7  The Preparation of Chicken Kidney Cell Cultures for Virus Propagation

8  The Preparation of Chicken Tracheal Organ Cultures and Their Application for Ciliostasis Test, Growth Kinetics Studies, and Virus Propagation

9  Isolation and Propagation of Coronaviruses in Embryonated Eggs

10  Well-Differentiated Primary Mammalian Airway Epithelial Cell Cultures

11  Quantification of Coronaviruses by Titration In Vitro and Ex Vivo

PART III  MANIPULATING THE GENOMES OF CORONAVIRUSES

12  Transient Dominant Selection for the Modification and Generation of Recombinant Infectious Bronchitis Coronaviruses

13  In-Yeast Assembly of Coronavirus Infectious cDNA Clones Using a Synthetic Genomics Pipeline

PART IV  STUDYING VIRUS-HOST INTERACTIONS

14  Proximity Labeling for the Identification of Coronavirus-Host Protein Interactions

15  Using Yeast to Identify Coronavirus-Host Protein Interactions..

16  Determining How Coronaviruses Overcome the Interferon and Innate Immune Response

17  Ribopuromycylation in Coronavirus-Infected Cells

PART V  IMAGING CORONAVIRUS INFECTIONS

18  Visualizing Coronavirus Entry into Cells

19  Preparation of Cultured Cells Using High-Pressure Freezing and Freeze Substitution for Subsequent 2D or 3D Visualization in the Transmission Electron Microscope

Index