Protein interactions : computational methods, analysis and applications / edited by M Michael Gromiha. -- New Jersey : World Scientific, c2020. – (58.17421/P967pi)

Contents

Preface

Acknowledgments

About the Editor

Part I  Protein-Protein Interactions

Chapter 1  Structural and dynamical aspects of evolutionarily conserved protein-protein complexes

Chapter 2  A comprehensive overview of sequence-based protein-binding residue predictions for structured and disordered regions

Chapter 3  Prediction of protein-protein complex structures by docking

Chapter 4  Binding affinity of protein-protein complexes: Experimental techniques, databases and computational methods

Chapter 5  Mutational effects on protein-protein interactions

Chapter 6  Predicting the consequences of mutations

Part II  Protein-Nucleic Acid Interactions

Chapter 7  Computational approaches for understanding the recognition mechanism of protein-nucleic acid complexes

Chapter 8  Prediction of nucleic acid binding proteins and their binding sites

Chapter 9  Predicting protein-binding sites in nucleic acids

Chapter 10  Docking algorithms and scoring functions

Chapter 11  Recent progress of methodology development for protein-RNA docking

Part III  Protein-Ligand Interactions

Chapter 12  Protein-carbohydrate complexes: Binding site analysis, prediction, binding affinity and molecular dynamics simulations

Chapter 13  Quantitative structure-activity relationship in ligand-based drug design: Concepts and applications

Chapter 14  Protein-ligand interactions in molecular modeling and structure-based drug design

Chapter 15  An overview of protein-ligand docking and scoring algorithms

Index