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Genome informatics 2008 : proceedings of the 19th International Conference, Gold Coast, Queensland, Australia, 1-3 December 2008 / editors, Jonathan Arthur, See-Kiong Ng. — London : Singapore ; Hackensack, NJ : Imperial College Press ; Distributed by |
Contents
CONTENTS
Preface
Acknowledgments
Committees
Part A Full Papers
An Approach to Transcriptome Analysis of Non-Model Organisms Using Short-Read Sequences
Factoring Local Sequence Composition in Motif Significance Analysis
A New Model of Multi-Marker Correlation for Genome-Wide Tag SNP Selection
Phenotype Profiling of Single Gene Deletion Mutants of E. coli Using Biolog Technology
Improved Algorithms for Enumerating Tree-Like Chemical Graphs with Given Path Frequency
BSAlign: A Rapid Graph-Based Algorithm for Detecting Ligand- Binding Sites in Protein Structures
Protein Complex Prediction Based on Mutually Exclusive Interactions in Protein Interaction Network
On the Reconstruction of the Mus musculus Genome-Scale Metabolic Network Model
Predicting Differences in Gene Regulatory Systems by State Space Models 101
Exploratory Simulation of Cell Ageing Using Hierarchical Models 114
Inferring Differential Leukocyte Using a Latent Variable Model
Activity from Antibody Microarrays
Assessing and Predicting Protein Interactions Using Both Local and Global Network Topological Metrics 138
Modelling the Evolution of Protein Coding Sequences Sampled from Measurably Evolving Populations 150
A Phylogenomic Approach for Studying Plastid Endosymbiosis
Cis-Regulatory Element Based Gene Finding: An Application in Arabidopsis thaliana
Using Simple Rules on Presence and Positioning of Motifs for Promoter Structure Modeling and Tissue-Specific Expression Prediction 188
Improving Gene Expression Cancer Molecular Pattern Discovery Using Nonnegative Principal Component Analysis
Simulation Analysis for the Effect of Light-Dark Cycle on the Entrainment in Circadian Rhythm
Part B Keynote Addresses
Sequencing the Transcriptome in toto
Modern Homology Search
Modeling Human Genome-Wide Combinatorial Regulatory Networks Initiated by Transcription Factors and microRNAs Using Forward and Reverse Engineering 230
Reconstructing the Circuits of Disease: From Molecular States to Physiological States 231
The Emerging Generalizations of Prokaryotic Genomics
A New Understanding of the Human Genome
Author Index