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Protein structure prediction / edited by Mohammed J. Zaki and Christopher Bystroff. — 2nd ed. — Totowa, NJ : Humana Press, 2007. – (58.17/M592/v.413) |
Contents
Contents
Preface v
Contributors xi
PART I: OVERVIEW OF PROTEIN STRUCTURE PREDICTION
1 A Historical Perspective of Template-Based Protein Structure Prediction
2 The Assessment of Methods for Protein Structure Prediction
PART II: TEMPLATE-BASED METNODS
3 Aligning Sequences to Structures
4 Protein Structure Prediction Using Threading
PART III: STRUCTURE ALIGNMENT AND INDEXING
5 Algorithms for Multiple Protein Structure Alignment and Structure-Derived Multiple Sequence Alignment
6 Indexing Protein Structures Using Suffix Trees
PART IV: PROTEIN FEATURES PREDICTION
7 Hidden Markov Models for Prediction of Protein Features
8 The Pros and Cons of Predicting Protein Contact Maps
9 Roadmap Methods for Protein Folding
PART V: METHODS FOR DE NOVO STRUCTURE PREDICTION
10 Scoring Functions for De Novo Protein Structure Prediction Revisited
11 Protein-Protein Docking: Overview and Performance Analysis
12 Molecular Dynamics Simulations of Protein Folding