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Advanced mechanical models of DNA elasticity / Yakov M. Tseytlin. -- London : Academic Press, c2016. – (58.174252/T882) |
Contents
Biography
Preface
Acknowledgments
1 DNA Molecules Mechanical Properties and
Models
1.1 Mechanical Properties
1.2 Discrete, Flexible Chains, and Atomistic
Models: WLC, FJC, DPC, WLRC, HW, ZZM
1.3 Continuum and Approximation Models
1.4 Dynamics and Fluctuation
1.5 Persistence Length Features
1.6 A, B, Z DNA Forms, S- and P-DNA Phases
1.7 Polymer Materials
1.8 DNA Technical Applications
1.9 DNA Size and Mass Conversion
1.10 Deflection at
Equilibrium
References
2 Force Application, Measurement, and
Manipulation Accessories
2.1 Stretching Micropipette, Glass Microneedles, and
Hydrodynamics
2.2 Optical Trap and Tweezers
2.3 Small-Angle X-ray Scattering Interference
(SAXSI)
2.4 Magnetic Tweezers
2.5 Atomic Force Microscopy
2.6 Concave Notch Hinges
References
3 AFM with Higher Mode Oscillations and Higher
Sensitivity
3.1 Effects of the Resonance Modes. Kinetostatic
Method
3.2 Effective Spring Constants Ratio
3.3 Cantilever End Inclination Spring Constants
3.4 Quality Factor Influence
3.5 End Extended
Mass (V-Shaped Cantilever)
3.6 Shift of
Resonant Frequency
3.7 Actuators and
Detectors
3.8 Internal and
External Damping
3.9 Calibration
References
4 Kinematics and Nonlinear Motion
Transformation in Elastic Helicoids
4.1 Helix Parameters
4.2 Motion Stability
4.3 Transmission Nonlinearity
4.4 Motion Transformation in a Thin Helicoidal
Strip
4.5 Coiled Ribbon Helicoids
4.6 Transmission Relations
4.7 Fatigue Options and Statistical Fluctuations
References
5 Dynamics of the Elastic Systems with
Helicoids
5.1 Dynamic Functions
5.2 Helicoids Dynamics
5.3 Vibration of a Thin Helicoid
5.4 Internal Friction (Damping) in a Helicoid
5.5 Shells and Quasi-Helicoids
5.6 Dynamic Rate in Helicoidal Sensors
5.7 Flexural Wave Propagation
5.8 Limits of the Transmission Fntropic
Fluctuations
References
6 Double-Stranded DNA Elasticity
6.1 Helix Chain
6.2 Properties of Explicit Helicoidal Model (EHM)
6.3 Twist-Stretch Coupling
6.4 Statistical Fluctuation
6.5 Stretch Stiffness and Poisson's Ratio
6.6 Persistence Length Relations and Poisson's
Ratio
6.7 Overwinding Options
6.8 Nonlinear Length Fluctuations
6.9 Speed Factor
References
7. DNA Elasticity with Transition
7.1 Discrete Persistence Chain (DPC)
7.2 Reverse WLC Modeling
7.3 Approximation by Sequence of Linear Springs
7.4 Explicit Helicoidal Model (EHM) Transition
7.5 Buckling of DNA Molecule
7.6 Elasticity of ssDNA, ZZM, DPC, and EHMR
Models
7.7 Mechanical Stability
7.8 Nonlinear Dynamics and Traveling Waves
7.9 EHM in Chains
References
