Bioinformatics : a Swiss perspective / editors, Ron D. Appel, Ernest Feytmans. — Singapore ; Hackensack, NJ : World Scientific Pub., c2009. – (58.17115/B615b)

Contents

    Contents
    
    Foreword
    Preface
    List of Contributors
    SECTION I GENES AND GENOMES
    Chapter 1 Methods for Discovery and Characterization of DNA Sequence Motifs
    Chapter 2 Comparative Genome Analysis
    Chapter 3 From Modules to Models: Advanced Analysis Methods for Large-Scale Data
    Chapter 4 Integrated Analysis of Gene Expression Profiling Studies -- Examples in Breast Cancer
    Chapter 5 Computational Biology of Small Regulatory RNAs
    SECTION II PROTEINS AND PROTEOMES
    Chapter 6 UniProtKB/Swiss-Prot Manual and Automated Annotation of Complete Proteomes: The Dictyostelium discoideum Case Study
    Chapter 7 Analytical Bioinformatics for Proteomics 169
    Chapter 8 Protein-Protein Interaction Networks: Assembly and Analysis
    Chapter 9 Protein Structure Modeling and Docking at the Swiss Institute of Bioinformatics
    Chapter 10 Molecular Modeling of Proteins: From Simulations to Drug Design Applications
    SECTION III PHYLOGENETICS AND EVOLUTIONARY BIOINFORMATICS
    Chapter 11 An Introduction to Phylogenetics and Its Molecular Aspects
    Chapter 12 Phylogenetic Tree Building Methods 329
    Chapter 13 Bioinformatics for Evolutionary Developmental Biology
    SECTION IV MODELING OF BIOLOGICAL SYSTEMS
    Chapter 14 Spatiotemporal Modeling and Simulation in Biology
    Index